IL_8RJB_096

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8RJB|1|K|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_096 not in the Motif Atlas

Homologous match to IL_8C3A_075

Geometric discrepancy: 0.1404

The information below is about IL_8C3A_075

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8RJB|1|K|C|2613
8RJB|1|K|C|2614
*
8RJB|1|K|G|2724
8RJB|1|K|A|2725
8RJB|1|K|G|2726

Current chains

Chain K

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain g

60S ribosomal protein L34