IL_8RJB_106

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8RJB|1|K|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_106 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.081

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8RJB|1|K|C|2867
8RJB|1|K|G|2868
8RJB|1|K|U|2869
8RJB|1|K|A|2870
8RJB|1|K|A|2871
8RJB|1|K|C|2872
*
8RJB|1|K|G|2877
8RJB|1|K|G|2878
8RJB|1|K|A|2879
8RJB|1|K|U|2880
8RJB|1|K|A|2881
8RJB|1|K|A|2882
8RJB|1|K|G|2883

Current chains

Chain K

28S rRNA

Nearby chains

Chain n

60S ribosomal protein L41

Chain p

60S ribosomal protein L37a