IL_8RJB_110

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8RJB|1|K|A|3663, 8RJB|1|K|U|3679, 8RJB|1|K|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_110 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.065

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8RJB|1|K|C|3660
8RJB|1|K|G|3661
8RJB|1|K|A|3662
8RJB|1|K|A|3663
8RJB|1|K|G|3664
8RJB|1|K|G|3665
*
8RJB|1|K|U|3677
8RJB|1|K|G|3678
8RJB|1|K|U|3679
8RJB|1|K|U|3680
8RJB|1|K|G|3681
8RJB|1|K|A|3682
8RJB|1|K|C|3683
8RJB|1|K|G|3684

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain p

60S ribosomal protein L37a