IL_8RJB_117

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8RJB|1|K|A|3785, 8RJB|1|K|C|3791, 8RJB|1|K|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_117 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0835

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8RJB|1|K|C|3781
8RJB|1|K|C|3782
8RJB|1|K|A|3783
8RJB|1|K|A|3784
8RJB|1|K|A|3785
8RJB|1|K|U|3786
8RJB|1|K|G|3787
8RJB|1|K|C|3788
8RJB|1|K|C|3789
8RJB|1|K|U|3790
8RJB|1|K|C|3791
8RJB|1|K|G|3792
*
8RJB|1|K|C|3808
8RJB|1|K|G|3809
8RJB|1|K|C|3810
8RJB|1|K|G|3811

Current chains

Chain K

28S rRNA

Nearby chains

Chain n

60S ribosomal protein L41