IL_8RJB_154
3D structure
- PDB id
- 8RJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69243 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 8RJB|1|K|C|4757, 8RJB|1|K|U|4758, 8RJB|1|K|A|4764, 8RJB|1|K|G|4870, 8RJB|1|K|C|4871, 8RJB|1|K|G|4873, 8RJB|1|K|A|4876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJB_154 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.5699
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8RJB|1|K|C|4756
8RJB|1|K|C|4757
8RJB|1|K|U|4758
8RJB|1|K|C|4759
8RJB|1|K|G|4760
8RJB|1|K|G|4761
8RJB|1|K|A|4762
8RJB|1|K|U|4763
8RJB|1|K|A|4764
8RJB|1|K|G|4765
8RJB|1|K|C|4766
*
8RJB|1|K|G|4868
8RJB|1|K|U|4869
8RJB|1|K|G|4870
8RJB|1|K|C|4871
8RJB|1|K|G|4872
8RJB|1|K|G|4873
8RJB|1|K|A|4874
8RJB|1|K|G|4875
8RJB|1|K|A|4876
8RJB|1|K|G|4877
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L18a
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