IL_8RJB_156

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_156 not in the Motif Atlas

Geometric match to IL_4K27_003

Geometric discrepancy: 0.2211

The information below is about IL_4K27_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8RJB|1|K|U|4885
8RJB|1|K|C|4886
8RJB|1|K|C|4887
8RJB|1|K|C|4888
*
8RJB|1|K|G|4931
8RJB|1|K|U|4932
8RJB|1|K|C|4933
8RJB|1|K|A|4934

Current chains

Chain K

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

60S ribosomal protein L14

Chain O

60S ribosomal protein L13