IL_8RJB_182

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_182 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.073

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8RJB|1|K|G|4400
8RJB|1|K|G|4401
8RJB|1|K|C|4402
8RJB|1|K|U|4403
*
8RJB|1|K|G|4440
8RJB|1|K|A|4441
8RJB|1|K|U|4442
8RJB|1|K|C|4443
8RJB|1|K|C|4444

Current chains

Chain K

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29

Chain w

Ribosomal protein L3