3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
GGUC*GCUAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RJC_018 not in the Motif Atlas
Geometric match to IL_4PHY_003
Geometric discrepancy: 0.3906
The information below is about IL_4PHY_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_99358.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

8RJC|1|K|G|443
8RJC|1|K|G|444
8RJC|1|K|U|445
8RJC|1|K|C|446
*
8RJC|1|K|G|1300
8RJC|1|K|C|1301
8RJC|1|K|U|1302
8RJC|1|K|A|1303
8RJC|1|K|C|1304

Current chains

Chain K
28S rRNA

Nearby chains

Chain e
Ribosomal protein L32
Chain f
60S ribosomal protein L35a
Chain v
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3015 s