IL_8RJC_018
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GGUC*GCUAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_018 not in the Motif Atlas
- Geometric match to IL_4PHY_003
- Geometric discrepancy: 0.3906
- The information below is about IL_4PHY_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99358.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
8RJC|1|K|G|443
8RJC|1|K|G|444
8RJC|1|K|U|445
8RJC|1|K|C|446
*
8RJC|1|K|G|1300
8RJC|1|K|C|1301
8RJC|1|K|U|1302
8RJC|1|K|A|1303
8RJC|1|K|C|1304
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain e
- Ribosomal protein L32
- Chain f
- 60S ribosomal protein L35a
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: