3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
GGUC*GC
Length
6 nucleotides
Bulged bases
8RJC|1|K|G|483, 8RJC|1|K|U|484
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RJC_024 not in the Motif Atlas
Geometric match to IL_1R3E_002
Geometric discrepancy: 0.099
The information below is about IL_1R3E_002
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_84476.1
Basepair signature
cWW-cWW
Number of instances in this motif group
13

Unit IDs

8RJC|1|K|G|482
8RJC|1|K|G|483
8RJC|1|K|U|484
8RJC|1|K|C|485
*
8RJC|1|K|G|671
8RJC|1|K|C|672

Current chains

Chain K
28S rRNA

Nearby chains

Chain r
60S ribosomal protein L28

Coloring options:


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