IL_8RJC_024
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GGUC*GC
- Length
- 6 nucleotides
- Bulged bases
- 8RJC|1|K|G|483, 8RJC|1|K|U|484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_024 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.099
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8RJC|1|K|G|482
8RJC|1|K|G|483
8RJC|1|K|U|484
8RJC|1|K|C|485
*
8RJC|1|K|G|671
8RJC|1|K|C|672
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain r
- 60S ribosomal protein L28
Coloring options: