IL_8RJC_034

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

8RJC|1|K|A|932, 8RJC|1|K|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|A|732
8RJC|1|K|A|733
8RJC|1|K|G|734
8RJC|1|K|G|735
*
8RJC|1|K|C|928
8RJC|1|K|A|929
8RJC|1|K|G|930
8RJC|1|K|C|931
8RJC|1|K|A|932
8RJC|1|K|G|933
8RJC|1|K|C|934
8RJC|1|K|A|935
8RJC|1|K|G|935|||A
8RJC|1|K|C|936
8RJC|1|K|U|937

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a