IL_8RJC_035

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

8RJC|1|K|C|738, 8RJC|1|K|C|738|||A, 8RJC|1|K|C|924, 8RJC|1|K|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_035 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.1733

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8RJC|1|K|C|737
8RJC|1|K|C|738
8RJC|1|K|C|738|||A
8RJC|1|K|G|739
*
8RJC|1|K|C|923
8RJC|1|K|C|924
8RJC|1|K|C|925
8RJC|1|K|G|926

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain M

60S ribosomal protein L14