3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
GGC*GGC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RJC_038 not in the Motif Atlas
Geometric match to IL_5UNE_003
Geometric discrepancy: 0.16
The information below is about IL_5UNE_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8RJC|1|K|G|1074
8RJC|1|K|G|1075
8RJC|1|K|C|1076
*
8RJC|1|K|G|1234
8RJC|1|K|G|1235
8RJC|1|K|C|1236

Current chains

Chain K
28S rRNA

Nearby chains

Chain C
Large ribosomal subunit protein uL4
Chain E
60S ribosomal protein L6
Chain F
Ribosomal Protein uL30
Chain b
60S ribosomal protein L29

Coloring options:


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