IL_8RJC_040

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8RJC|1|K|C|1214, 8RJC|1|K|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_040 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2083

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8RJC|1|K|C|1082
8RJC|1|K|U|1083
8RJC|1|K|C|1084
*
8RJC|1|K|G|1213
8RJC|1|K|C|1214
8RJC|1|K|C|1215
8RJC|1|K|C|1216
8RJC|1|K|G|1217

Current chains

Chain K

28S rRNA

Nearby chains

Chain F

Ribosomal Protein uL30

Chain b

60S ribosomal protein L29