IL_8RJC_042

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CGC*GCGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_042 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3889

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8RJC|1|K|C|1097
8RJC|1|K|G|1098
8RJC|1|K|C|1099
*
8RJC|1|K|G|1196
8RJC|1|K|C|1197
8RJC|1|K|G|1198
8RJC|1|K|G|1199

Current chains

Chain K

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L18a

Chain T

60S ribosomal protein L21