IL_8RJC_044

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GGA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_044 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.1083

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8RJC|1|K|G|1173
8RJC|1|K|G|1174
8RJC|1|K|A|1175
*
8RJC|1|K|U|1186
8RJC|1|K|G|1187
8RJC|1|K|C|1188

Current chains

Chain K

28S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein