IL_8RJC_054

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

8RJC|1|K|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_054 not in the Motif Atlas

Homologous match to IL_8C3A_031

Geometric discrepancy: 0.0667

The information below is about IL_8C3A_031

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8RJC|1|K|G|1545
8RJC|1|K|C|1546
*
8RJC|1|K|G|1612
8RJC|1|K|A|1613
8RJC|1|K|C|1614

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain g

60S ribosomal protein L34

Chain p

60S ribosomal protein L37a