IL_8RJC_065
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- AA*UUU
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_065 not in the Motif Atlas
- Geometric match to IL_5TBW_039
- Geometric discrepancy: 0.1124
- The information below is about IL_5TBW_039
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
8RJC|1|K|A|1737
8RJC|1|K|A|1738
*
8RJC|1|K|U|1790
8RJC|1|K|U|1791
8RJC|1|K|U|1792
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain I
- 60S ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
- Chain u
- 5S ribosomal RNA; 5S rRNA
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