3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
8RJC|1|K|A|2002
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RJC_084 not in the Motif Atlas
Geometric match to IL_5D8H_003
Geometric discrepancy: 0.2335
The information below is about IL_5D8H_003
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_51387.3
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
21

Unit IDs

8RJC|1|K|G|2001
8RJC|1|K|A|2002
8RJC|1|K|G|2003
8RJC|1|K|U|2004
8RJC|1|K|G|2005
*
8RJC|1|K|C|2014
8RJC|1|K|U|2015
8RJC|1|K|C|2016

Current chains

Chain K
28S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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