IL_8RJC_084

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8RJC|1|K|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_084 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2335

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8RJC|1|K|G|2001
8RJC|1|K|A|2002
8RJC|1|K|G|2003
8RJC|1|K|U|2004
8RJC|1|K|G|2005
*
8RJC|1|K|C|2014
8RJC|1|K|U|2015
8RJC|1|K|C|2016

Current chains

Chain K

28S rRNA

Nearby chains