IL_8RJC_084
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 8RJC|1|K|A|2002
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_084 not in the Motif Atlas
- Geometric match to IL_5D8H_003
- Geometric discrepancy: 0.2335
- The information below is about IL_5D8H_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
8RJC|1|K|G|2001
8RJC|1|K|A|2002
8RJC|1|K|G|2003
8RJC|1|K|U|2004
8RJC|1|K|G|2005
*
8RJC|1|K|C|2014
8RJC|1|K|U|2015
8RJC|1|K|C|2016
Current chains
- Chain K
- 28S rRNA
Nearby chains
No other chains within 10ÅColoring options: