IL_8RJC_093

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_093 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2008

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

8RJC|1|K|A|2477
8RJC|1|K|C|2478
8RJC|1|K|G|2479
*
8RJC|1|K|C|2499
8RJC|1|K|U|2500

Current chains

Chain K

28S rRNA

Nearby chains

Chain X

Ribosomal_L23eN domain-containing protein

Chain v

5.8S ribosomal RNA; 5.8S rRNA