IL_8RJC_126

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_126 not in the Motif Atlas

Homologous match to IL_8C3A_107

Geometric discrepancy: 0.1011

The information below is about IL_8C3A_107

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8RJC|1|K|G|4191
8RJC|1|K|A|4192
*
8RJC|1|K|U|4202
8RJC|1|K|A|4203
8RJC|1|K|C|4204

Current chains

Chain K

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29

Chain o

60S ribosomal protein L36a-like

Chain q

Transfer RNA; tRNA