3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
UCCC*GUCA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RJC_156 not in the Motif Atlas
Geometric match to IL_4K27_003
Geometric discrepancy: 0.2309
The information below is about IL_4K27_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_77658.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
34

Unit IDs

8RJC|1|K|U|4885
8RJC|1|K|C|4886
8RJC|1|K|C|4887
8RJC|1|K|C|4888
*
8RJC|1|K|G|4931
8RJC|1|K|U|4932
8RJC|1|K|C|4933
8RJC|1|K|A|4934

Current chains

Chain K
28S rRNA

Nearby chains

Chain E
60S ribosomal protein L6
Chain M
60S ribosomal protein L14

Coloring options:


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