3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
UCGUACG*UUGAAA
Length
13 nucleotides
Bulged bases
8RJC|1|K|G|5041
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8RJC|1|K|U|5003
8RJC|1|K|C|5004
8RJC|1|K|G|5005
8RJC|1|K|U|5006
8RJC|1|K|A|5007
8RJC|1|K|C|5008
8RJC|1|K|G|5009
*
8RJC|1|K|U|5039
8RJC|1|K|U|5040
8RJC|1|K|G|5041
8RJC|1|K|A|5042
8RJC|1|K|A|5043
8RJC|1|K|A|5044

Current chains

Chain K
28S rRNA

Nearby chains

Chain W
Ribosomal protein L24
Chain d
60S ribosomal protein L31
Chain w
Ribosomal protein L3

Coloring options:

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