IL_8RJC_163

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

8RJC|1|K|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|U|5003
8RJC|1|K|C|5004
8RJC|1|K|G|5005
8RJC|1|K|U|5006
8RJC|1|K|A|5007
8RJC|1|K|C|5008
8RJC|1|K|G|5009
*
8RJC|1|K|U|5039
8RJC|1|K|U|5040
8RJC|1|K|G|5041
8RJC|1|K|A|5042
8RJC|1|K|A|5043
8RJC|1|K|A|5044

Current chains

Chain K

28S rRNA

Nearby chains

Chain W

Ribosomal protein L24

Chain d

60S ribosomal protein L31

Chain w

Ribosomal protein L3