IL_8RJD_047

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_047 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.31

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8RJD|1|K|G|1425
8RJD|1|K|G|1426
8RJD|1|K|A|1427
8RJD|1|K|U|1428
8RJD|1|K|C|1429
*
8RJD|1|K|G|1455
8RJD|1|K|C|1456
8RJD|1|K|G|1457
8RJD|1|K|C|1458
8RJD|1|K|A|1459
8RJD|1|K|C|1460

Current chains

Chain K

28S rRNA

Nearby chains

Chain Q

Ribosomal protein L18

Chain b

60S ribosomal protein L29