IL_8RJD_048

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_048 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1892

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8RJD|1|K|C|1431
8RJD|1|K|G|1432
8RJD|1|K|A|1433
8RJD|1|K|G|1434
*
8RJD|1|K|C|1450
8RJD|1|K|G|1451
8RJD|1|K|A|1452
8RJD|1|K|G|1453

Current chains

Chain K

28S rRNA

Nearby chains

Chain Q

Ribosomal protein L18