IL_8RJD_066
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8RJD|1|K|G|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_066 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0809
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8RJD|1|K|G|1739
8RJD|1|K|C|1740
8RJD|1|K|G|1741
8RJD|1|K|A|1742
8RJD|1|K|A|1743
8RJD|1|K|U|1744
*
8RJD|1|K|A|1786
8RJD|1|K|A|1787
8RJD|1|K|A|1788
8RJD|1|K|C|1789
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain I
- 60S ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
- Chain u
- 5S ribosomal RNA; 5S rRNA
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