IL_8RJD_067

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_067 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3912

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8RJD|1|K|G|1745
8RJD|1|K|A|1746
8RJD|1|K|U|1747
8RJD|1|K|U|1748
8RJD|1|K|A|1749
*
8RJD|1|K|U|1781
8RJD|1|K|U|1782
8RJD|1|K|C|1783
8RJD|1|K|U|1784
8RJD|1|K|C|1785

Current chains

Chain K

28S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain I

60S ribosomal protein L10

Chain u

5S ribosomal RNA; 5S rRNA