IL_8RJD_079
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8RJD|1|K|C|1935, 8RJD|1|K|A|2041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_079 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1606
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8RJD|1|K|G|1933
8RJD|1|K|A|1934
8RJD|1|K|C|1935
8RJD|1|K|C|1936
8RJD|1|K|C|1937
8RJD|1|K|C|1938
8RJD|1|K|A|1939
8RJD|1|K|G|1940
8RJD|1|K|A|1941
8RJD|1|K|A|1942
8RJD|1|K|A|1943
8RJD|1|K|A|1944
*
8RJD|1|K|U|2038
8RJD|1|K|G|2039
8RJD|1|K|A|2040
8RJD|1|K|A|2041
8RJD|1|K|A|2042
8RJD|1|K|A|2043
8RJD|1|K|U|2044
8RJD|1|K|G|2045
8RJD|1|K|G|2046
8RJD|1|K|A|2047
8RJD|1|K|U|2048
8RJD|1|K|G|2049
8RJD|1|K|G|2050
8RJD|1|K|C|2051
8RJD|1|K|G|2052
8RJD|1|K|C|2053
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain O
- 60S ribosomal protein L13a
- Chain f
- 60S ribosomal protein L35a
- Chain m
- eL40
- Chain u
- 5S ribosomal RNA; 5S rRNA
- Chain w
- Ribosomal protein L3
Coloring options: