IL_8RJD_106

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8RJD|1|K|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_106 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.084

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8RJD|1|K|C|2867
8RJD|1|K|G|2868
8RJD|1|K|U|2869
8RJD|1|K|A|2870
8RJD|1|K|A|2871
8RJD|1|K|C|2872
*
8RJD|1|K|G|2877
8RJD|1|K|G|2878
8RJD|1|K|A|2879
8RJD|1|K|U|2880
8RJD|1|K|A|2881
8RJD|1|K|A|2882
8RJD|1|K|G|2883

Current chains

Chain K

28S rRNA

Nearby chains

Chain n

60S ribosomal protein L41

Chain p

60S ribosomal protein L37a