IL_8RJD_134

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_134 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.0852

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8RJD|1|K|C|4412
8RJD|1|K|C|4413
8RJD|1|K|A|4414
8RJD|1|K|A|4415
8RJD|1|K|G|4416
*
8RJD|1|K|C|4426
8RJD|1|K|G|4427
8RJD|1|K|A|4428
8RJD|1|K|C|4429
8RJD|1|K|G|4430

Current chains

Chain K

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain m

eL40