IL_8RJD_143

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

UGC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_143 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1498

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8RJD|1|K|U|4580
8RJD|1|K|G|4581
8RJD|1|K|C|4582
*
8RJD|1|K|G|4721
8RJD|1|K|G|4722
8RJD|1|K|A|4723

Current chains

Chain K

28S rRNA

Nearby chains

Chain O

60S ribosomal protein L13a

Chain w

Ribosomal protein L3