IL_8RJD_147

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

ACAUUU*ACCAU

Length

11 nucleotides

Bulged bases

8RJD|1|K|C|4670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|A|4624
8RJD|1|K|C|4625
8RJD|1|K|A|4626
8RJD|1|K|U|4627
8RJD|1|K|U|4628
8RJD|1|K|U|4629
*
8RJD|1|K|A|4669
8RJD|1|K|C|4670
8RJD|1|K|C|4671
8RJD|1|K|A|4672
8RJD|1|K|U|4673

Current chains

Chain K

28S rRNA

Nearby chains

Chain V

Ribosomal protein L23

Chain W

Ribosomal protein L24

Chain w

Ribosomal protein L3