IL_8RJD_148

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

8RJD|1|K|U|4634, 8RJD|1|K|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_148 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1975

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8RJD|1|K|U|4632
8RJD|1|K|G|4633
8RJD|1|K|U|4634
8RJD|1|K|A|4635
8RJD|1|K|U|4636
8RJD|1|K|G|4637
*
8RJD|1|K|C|4662
8RJD|1|K|G|4663
8RJD|1|K|A|4664
8RJD|1|K|A|4665
8RJD|1|K|G|4666

Current chains

Chain K

28S rRNA

Nearby chains

Chain W

Ribosomal protein L24

Chain d

60S ribosomal protein L31

Chain w

Ribosomal protein L3