IL_8RJD_151

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8RJD|1|K|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_151 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2327

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8RJD|1|K|G|4680
8RJD|1|K|A|4681
8RJD|1|K|U|4682
8RJD|1|K|U|4683
8RJD|1|K|A|4684
8RJD|1|K|U|4685
*
8RJD|1|K|A|4705
8RJD|1|K|G|4706
8RJD|1|K|A|4707
8RJD|1|K|A|4708
8RJD|1|K|U|4709
8RJD|1|K|C|4710

Current chains

Chain K

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

60S ribosomal protein L13a

Chain m

eL40