IL_8RJD_175
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- CGAAU*AAAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 8RJD|1|K|G|119, 8RJD|1|K|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_175 not in the Motif Atlas
- Homologous match to IL_8GLP_287
- Geometric discrepancy: 0.0594
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8RJD|1|K|C|118
8RJD|1|K|G|119
8RJD|1|K|A|120
8RJD|1|K|A|121
8RJD|1|K|U|122
*
8RJD|1|K|A|147
8RJD|1|K|A|148
8RJD|1|K|A|149
8RJD|1|K|U|150
8RJD|1|K|G|151
8RJD|1|K|U|152
8RJD|1|K|G|153
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
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