IL_8RJD_179

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

8RJD|1|K|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_179 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.058

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8RJD|1|K|G|2847
8RJD|1|K|G|2848
8RJD|1|K|A|2849
8RJD|1|K|A|2850
8RJD|1|K|G|2851
8RJD|1|K|U|2852
8RJD|1|K|C|2853
8RJD|1|K|G|2854
8RJD|1|K|G|2855
*
8RJD|1|K|C|3837
8RJD|1|K|U|3838
8RJD|1|K|G|3839
8RJD|1|K|U|3840
8RJD|1|K|C|3841

Current chains

Chain K

28S rRNA

Nearby chains

Chain V

Ribosomal protein L23

Chain w

Ribosomal protein L3