IL_8RJD_181
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GACCU*AGC
- Length
- 8 nucleotides
- Bulged bases
- 8RJD|1|K|C|4349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_181 not in the Motif Atlas
- Geometric match to IL_8C3A_419
- Geometric discrepancy: 0.2633
- The information below is about IL_8C3A_419
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47767.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RJD|1|K|G|4347
8RJD|1|K|A|4348
8RJD|1|K|C|4349
8RJD|1|K|C|4350
8RJD|1|K|U|4351
*
8RJD|1|K|A|4363
8RJD|1|K|G|4364
8RJD|1|K|C|4365
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain Q
- Ribosomal protein L18
- Chain a
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: