IL_8RL2_027

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

8RL2|1|L5|C|501, 8RL2|1|L5|C|502, 8RL2|1|L5|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RL2_027 not in the Motif Atlas

Geometric match to IL_6CZR_119

Geometric discrepancy: 0.2896

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8RL2|1|L5|G|500
8RL2|1|L5|C|501
8RL2|1|L5|C|502
8RL2|1|L5|C|503
8RL2|1|L5|G|504
8RL2|1|L5|G|505
*
8RL2|1|L5|U|653
8RL2|1|L5|C|654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18