IL_8RL2_035

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8RL2|1|L5|G|748, 8RL2|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RL2_035 not in the Motif Atlas

Geometric match to IL_8C3A_022

Geometric discrepancy: 0.1053

The information below is about IL_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RL2|1|L5|G|745
8RL2|1|L5|A|746
8RL2|1|L5|A|747
8RL2|1|L5|G|748
8RL2|1|L5|G|749
8RL2|1|L5|U|750
8RL2|1|L5|G|751
8RL2|1|L5|G|752
*
8RL2|1|L5|U|911
8RL2|1|L5|G|912
8RL2|1|L5|U|913
8RL2|1|L5|U|914
8RL2|1|L5|A|915
8RL2|1|L5|C|916
8RL2|1|L5|A|917
8RL2|1|L5|G|918
8RL2|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a