IL_8RL2_058

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

8RL2|1|L5|G|1741, 8RL2|1|L5|A|1742, 8RL2|1|L5|A|1787, 8RL2|1|L5|A|1788

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RL2_058 not in the Motif Atlas

Homologous match to IL_8C3A_043

Geometric discrepancy: 0.3018

The information below is about IL_8C3A_043

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_02509.3

Basepair signature

cWW-cWS-cWW-cWW-R-cSH-tWH-R

Number of instances in this motif group

6

Unit IDs

8RL2|1|L5|G|1739
8RL2|1|L5|C|1740
8RL2|1|L5|G|1741
8RL2|1|L5|A|1742
8RL2|1|L5|A|1743
8RL2|1|L5|U|1744
*
8RL2|1|L5|A|1786
8RL2|1|L5|A|1787
8RL2|1|L5|A|1788
8RL2|1|L5|C|1789

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Guanine nucleotide-binding protein-like 3