IL_8RL2_103

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RL2_103 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1888

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8RL2|1|L5|U|3715
8RL2|1|L5|C|3716
8RL2|1|L5|A|3717
8RL2|1|L5|A|3718
8RL2|1|L5|A|3719
8RL2|1|L5|G|3720
8RL2|1|L5|U|3721
*
8RL2|1|L5|A|3732
8RL2|1|L5|A|3733
8RL2|1|L5|U|3734
8RL2|1|L5|G|3735
8RL2|1|L5|A|3736
8RL2|1|L5|A|3737
8RL2|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36