IL_8RL2_114

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8RL2|1|L5|A|4348, 8RL2|1|L5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RL2_114 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1594

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8RL2|1|L5|G|4347
8RL2|1|L5|A|4348
8RL2|1|L5|C|4349
8RL2|1|L5|C|4350
*
8RL2|1|L5|G|4364
8RL2|1|L5|C|4365

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a