IL_8RL2_121

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RL2_121 not in the Motif Atlas

Geometric match to IL_4V9F_075

Geometric discrepancy: 0.3244

The information below is about IL_4V9F_075

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8RL2|1|L5|C|4537
8RL2|1|L5|G|4538
*
8RL2|1|L5|C|4547
8RL2|1|L5|A|4548
8RL2|1|L5|G|4549

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Nucleolar GTP-binding protein 2

Chain CH

Ribosome biogenesis protein NSA2 homolog