IL_8RL2_139

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGCG*CC

Length

6 nucleotides

Bulged bases

8RL2|1|L5|C|4900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RL2_139 not in the Motif Atlas

Geometric match to IL_5J7L_391

Geometric discrepancy: 0.2798

The information below is about IL_5J7L_391

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8RL2|1|L5|G|4898
8RL2|1|L5|G|4899
8RL2|1|L5|C|4900
8RL2|1|L5|G|4901
*
8RL2|1|L5|C|4921
8RL2|1|L5|C|4922

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CE

Protein LLP homolog

Chain LM

60S ribosomal protein L14