IL_8RPY_016

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8RPY|1|A|G|801, 8RPY|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0824

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8RPY|1|A|G|674
8RPY|1|A|A|675
8RPY|1|A|A|676
8RPY|1|A|A|677
8RPY|1|A|C|678
*
8RPY|1|A|G|799
8RPY|1|A|A|800
8RPY|1|A|G|801
8RPY|1|A|A|802
8RPY|1|A|U|803
8RPY|1|A|A|804
8RPY|1|A|G|805
8RPY|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15