IL_8RPY_021
3D structure
- PDB id
- 8RPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8RPY|1|A|G|776, 8RPY|1|A|A|788, 8RPY|1|A|A|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RPY_021 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.111
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RPY|1|A|G|775
8RPY|1|A|G|776
8RPY|1|A|G|777
*
8RPY|1|A|C|787
8RPY|1|A|A|788
8RPY|1|A|A|789
8RPY|1|A|U|790
8RPY|1|A|C|791
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain C
- Large ribosomal subunit protein uL2
- Chain S
- Large ribosomal subunit protein uL22
- Chain z
- Apidaecins type 137
Coloring options: