IL_8RPY_031

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGGG*UUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_031 not in the Motif Atlas

Geometric match to IL_205D_001

Geometric discrepancy: 0.3979

The information below is about IL_205D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8RPY|1|A|G|879
8RPY|1|A|G|880
8RPY|1|A|G|881
8RPY|1|A|G|882
*
8RPY|1|A|U|894
8RPY|1|A|U|895
8RPY|1|A|A|896
8RPY|1|A|C|897
8RPY|1|A|C|898

Current chains

Chain A

23S ribosomal RNA

Nearby chains