IL_8RPY_039

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_039 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.2054

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8RPY|1|A|U|1035
8RPY|1|A|G|1036
8RPY|1|A|G|1037
*
8RPY|1|A|C|1118
8RPY|1|A|U|1119
8RPY|1|A|G|1120

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain B

5S ribosomal RNA; 5S rRNA

Chain G

Large ribosomal subunit protein uL6

Chain M

Large ribosomal subunit protein uL16

Chain V

Large ribosomal subunit protein bL25