IL_8RPY_042

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CCA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCA,UGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_042 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2935

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8RPY|1|A|C|1052
8RPY|1|A|C|1053
8RPY|1|A|A|1054
*
8RPY|1|A|U|1105
8RPY|1|A|G|1106
8RPY|1|A|G|1107

Current chains

Chain A

23S ribosomal RNA

Nearby chains