IL_8RPZ_016

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8RPZ|1|A|G|801, 8RPZ|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0782

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8RPZ|1|A|G|674
8RPZ|1|A|A|675
8RPZ|1|A|A|676
8RPZ|1|A|A|677
8RPZ|1|A|C|678
*
8RPZ|1|A|G|799
8RPZ|1|A|A|800
8RPZ|1|A|G|801
8RPZ|1|A|A|802
8RPZ|1|A|U|803
8RPZ|1|A|A|804
8RPZ|1|A|G|805
8RPZ|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15