IL_8RPZ_026

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_026 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.0796

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8RPZ|1|A|G|856
8RPZ|1|A|G|857
8RPZ|1|A|G|858
8RPZ|1|A|G|859
8RPZ|1|A|U|860
8RPZ|1|A|A|861
8RPZ|1|A|G|862
*
8RPZ|1|A|C|915
8RPZ|1|A|G|916
8RPZ|1|A|A|917
8RPZ|1|A|A|918
8RPZ|1|A|U|919
8RPZ|1|A|A|920
8RPZ|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL27

Chain Z

Large ribosomal subunit protein uL30